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Files of XNBC

The following table gives the name, type and content of the xnbc files.

An important fiel is the invisible /.xnbcrc file, in the home directory. This file always stores the current working xnbc project and directory, the current network file and the current simulation file. It is automatically updated and allows to quit xnbc and runing it back with the same simulation environment. Removing this file is not a good idea, since all programs (except neuon editors, since neuron description ca be stored anywhere and their location is stored in the network description file .lnk). If this file does not exists, the current path becomes ./noname_nbc and the other files ./noname_nbc/noname.

In the table when a file name is called XX and YY, this signifies that all XX (or YY) files have the same XX (or YY) prefix and a different extension and that XX and YY can be different (but can be also identical).

All text files can be edited using any text editor (but the file structure should be unsderstood ...). Binary files are not editable.

Program Input files Output files Content Type PostScript files
xnbc control panel /.xnbcrc /.xnbcrc current files    
Neuron editors          
Phenomenologic *.P_unit *.P_unit unit parameters text *.P_unit.ps
  *.L_unit *.L_unit unit parameters text *.L_unit.ps
  *.B_unit *.B_unit unit parameters text *.B_unit.ps

Conductance

*.G_unit *.G_unit unit parameters text *.G_unit.ps
          *.G_unit_XY.ps
          *.G_unit_activ.ps

Network editors

         
Simple /.xnbcrc YY.lnk network description text  
  XX.lnk YY.clu clusters used text  
    YY.len axon lengths bin  
    YY.wgt synaptic weights bin  
    YY.anat unit position bin  
    /.xnbcrc   text  

Full featured

/.xnbcrc YY.lnk network description text YY.ps
  XX.lnk YY.clu clusters used text  
  /.net_customrc YY.len axon lengths bin  
    YY.wgt synaptic weights bin  
    YY.anat unit position bin  
    /.net_customrc customizations text  
    /.xnbcrc   text  

Drug editor

/.xnbcrc Default.drug drug description text  

Simulator

/.xnbcrc YY.pmb membrane potential text  
  XX.lnk YY.sim global activity text  
  XX.clu YY.tms time series text  
  XX.x_def YY.mod modifications text  
  *.P_unit YY.prm parameters text  
  *.L_unit YY.x_def parameters bin  
  *.B_unit /.xnbcrc   text  
  *.tms        

Visualization

/.xnbcrc       YY.ps
  XX.lnk        
  XX.anat        
  YY.sim        

Analysis tools

         
Time series /.xtmsrc /.xtmsrc user defaults text  
  /.xnbcrc YY.acr autocorrrelogram text YY.ps
  YY.tms YY.ccr cross correlogram text  
    YY.hst post event histogram text  
    YY.isi interspike interval text  

Time series

/.xnbcrc YY.acr autocorrrelogram text YY.ps
  YY.sim YY.ccr cross correlogram text  
    YY.hst post event histogram text  
    YY.isi interspike interval text  


next up previous contents
Next: PUM model equations Up: XNBC8 User Manual V8.21 Previous: Installation of XNBC
Jean-Francois Vibert
1998-08-26